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Clinical Pipeline Engine using Apache cTAKES

An implementation of a clinical pipeline engine based on Apache cTAKES

Лицензия

Лицензия
Категории

Категории

CLI Взаимодействие с пользователем Takes Веб-фреймворки
Группа

Группа

it.cnr.iac
Идентификатор

Идентификатор

ctakes-clinical-pipeline
Последняя версия

Последняя версия

0.0.2
Дата

Дата
Тип

Тип

jar
Описание

Описание

Clinical Pipeline Engine using Apache cTAKES
An implementation of a clinical pipeline engine based on Apache cTAKES
Ссылка на сайт

Ссылка на сайт

https://github.com/giuseppetotaro/ctakes-clinical-pipeline
Система контроля версий

Система контроля версий

https://github.com/giuseppetotaro/ctakes-clinical-pipeline

Скачать ctakes-clinical-pipeline

Имя Файла Размер
ctakes-clinical-pipeline-0.0.2.pom
ctakes-clinical-pipeline-0.0.2.jar 11 KB
ctakes-clinical-pipeline-0.0.2-tests.jar 3 KB
ctakes-clinical-pipeline-0.0.2-sources.jar 4 KB
ctakes-clinical-pipeline-0.0.2-javadoc.jar 45 KB
Обзор

Как подключить последнюю версию

<!-- https://jarcasting.com/artifacts/it.cnr.iac/ctakes-clinical-pipeline/ -->
<dependency>
    <groupId>it.cnr.iac</groupId>
    <artifactId>ctakes-clinical-pipeline</artifactId>
    <version>0.0.2</version>
</dependency>
// https://jarcasting.com/artifacts/it.cnr.iac/ctakes-clinical-pipeline/
implementation 'it.cnr.iac:ctakes-clinical-pipeline:0.0.2'
// https://jarcasting.com/artifacts/it.cnr.iac/ctakes-clinical-pipeline/
implementation ("it.cnr.iac:ctakes-clinical-pipeline:0.0.2")
'it.cnr.iac:ctakes-clinical-pipeline:jar:0.0.2'
<dependency org="it.cnr.iac" name="ctakes-clinical-pipeline" rev="0.0.2">
  <artifact name="ctakes-clinical-pipeline" type="jar" />
</dependency>
@Grapes(
@Grab(group='it.cnr.iac', module='ctakes-clinical-pipeline', version='0.0.2')
)
libraryDependencies += "it.cnr.iac" % "ctakes-clinical-pipeline" % "0.0.2"
[it.cnr.iac/ctakes-clinical-pipeline "0.0.2"]

Зависимости

compile (1)

Идентификатор библиотеки Тип Версия
org.cleartk : cleartk-ml jar 2.0.0

provided (9)

Идентификатор библиотеки Тип Версия
org.apache.ctakes : ctakes-type-system jar 3.2.2
org.apache.ctakes : ctakes-core jar 3.2.2
org.apache.ctakes : ctakes-chunker jar 3.2.2
org.apache.ctakes : ctakes-constituency-parser jar 3.2.2
org.apache.ctakes : ctakes-context-tokenizer jar 3.2.2
org.apache.ctakes : ctakes-dependency-parser jar 3.2.2
org.apache.ctakes : ctakes-dictionary-lookup jar 3.2.2
org.apache.ctakes : ctakes-dictionary-lookup-fast jar 3.2.2
org.apache.ctakes : ctakes-assertion jar 3.2.2

Модули Проекта

Данный проект не имеет модулей.

ctakes-clinical-pipeline

A command line tool based on Apache cTAKES in order to run the complete pipeline for annotating clinical documents in plain text format using the built in UMLS (SNOMEDCT and RxNORM) dictionaries.

Basically, this tool extends the ClinicalPipelineFactory class by adding the opportunity to run the cTAKES pipeline on arbitrary text instead of using only the static text defined into ClinicalPipelineFactory.java.

Getting started

To build the project, you can type the following command:

mvn clean install

To run the ctakes-clinical-pipeline, you can launch the following script (in /src/main/bin):

./run_ctakes.sh -i /path/to/input -o /path/to/output -u umls_user -p umls_pass [-j /path/to/jar] [-c /path/to/ctakes]

Please be sure that Apache cTAKES (both jar files and resources) is correctly installed on your machine.

Apache cTAKES

Apache cTAKES (clinical Text Analysis and Knowledge Extraction System) is an open-source natural language processing system for information extraction from electronic medical record clinical free-text. It processes clinical notes identifying types of clinical named entities.

cTAKES has been built using the Apache UIMA framework and OpenNLP toolkit. Its components are specifically trained for the clinical domain, and create rich linguistic and semantic annotations that can be utilized by clinical decision support systems and clinical research.

Apache cTAKES can be installed and configured following the instructions provided by the User Installation guide.

License

Apache License, Version 2.0

Версии библиотеки

Версия
0.0.2