io.github.msdk:msdk-all

A java library for the development of mass spectrometry-related algorithms.

Лицензия	Лицензия GNU Lesser General Public License (LGPL) 2.1 Eclipse Public License (EPL) 1.0
Группа	Группа io.github.msdk
Идентификатор	Идентификатор msdk-all
Последняя версия	Последняя версия 0.0.27
Дата	Дата 28 июл. 2019 г.
Тип	Тип jar
Описание	Описание A java library for the development of mass spectrometry-related algorithms.

Скачать msdk-all

Имя Файла	Размер
msdk-all-0.0.27.pom
msdk-all-0.0.27.jar	1 KB
Обзор

Как подключить последнюю версию

Apache Maven

<!-- https://jarcasting.com/artifacts/io.github.msdk/msdk-all/ -->
<dependency>
    <groupId>io.github.msdk</groupId>
    <artifactId>msdk-all</artifactId>
    <version>0.0.27</version>
</dependency>

Gradle Groovy

// https://jarcasting.com/artifacts/io.github.msdk/msdk-all/
implementation 'io.github.msdk:msdk-all:0.0.27'

Gradle Kotlin

// https://jarcasting.com/artifacts/io.github.msdk/msdk-all/
implementation ("io.github.msdk:msdk-all:0.0.27")

Apache Buildr

'io.github.msdk:msdk-all:jar:0.0.27'

Apache Ivy

<dependency org="io.github.msdk" name="msdk-all" rev="0.0.27">
  <artifact name="msdk-all" type="jar" />
</dependency>

Groovy Grape

@Grapes(
@Grab(group='io.github.msdk', module='msdk-all', version='0.0.27')
)

Scala SBT

libraryDependencies += "io.github.msdk" % "msdk-all" % "0.0.27"

Leiningen

[io.github.msdk/msdk-all "0.0.27"]

Зависимости

compile (42)

Идентификатор библиотеки	Тип	Версия
io.github.msdk : msdk-datamodel	jar	0.0.27
io.github.msdk : msdk-io-fileimport	jar	0.0.27
io.github.msdk : msdk-io-filetypedetection	jar	0.0.27
io.github.msdk : msdk-io-mzdata	jar	0.0.27
io.github.msdk : msdk-io-mzdb	jar	0.0.27
io.github.msdk : msdk-io-mzml	jar	0.0.27
io.github.msdk : msdk-io-mztab	jar	0.0.27
io.github.msdk : msdk-io-mzxml	jar	0.0.27
io.github.msdk : msdk-io-nativeformats	jar	0.0.27
io.github.msdk : msdk-io-netcdf	jar	0.0.27
io.github.msdk : msdk-io-txt	jar	0.0.27
io.github.msdk : msdk-io-chromatof	jar	0.0.27
io.github.msdk : msdk-io-mgf	jar	0.0.27
io.github.msdk : msdk-io-msp	jar	0.0.27
io.github.msdk : msdk-rawdata-filters	jar	0.0.27
io.github.msdk : msdk-rawdata-baselinecorrection	jar	0.0.27
io.github.msdk : msdk-spectra-centroiding	jar	0.0.27
io.github.msdk : msdk-spectra-peakinvestigator	jar	0.0.27
io.github.msdk : msdk-spectra-centroidprofiledetection	jar	0.0.27
io.github.msdk : msdk-spectra-splash	jar	0.0.27
io.github.msdk : msdk-db-mona	jar	0.0.27
io.github.msdk : msdk-db-kegg	jar	0.0.27
io.github.msdk : msdk-db-gnps	jar	0.0.27
io.github.msdk : msdk-id-sirius	jar	0.0.27
io.github.msdk : msdk-id-metfrag	jar	0.0.27
io.github.msdk : msdk-id-localdatabase	jar	0.0.27
io.github.msdk : msdk-alignment-joinaligner	jar	0.0.27
io.github.msdk : msdk-alignment-ransac	jar	0.0.27
io.github.msdk : msdk-normalization-stdcompound	jar	0.0.27
io.github.msdk : msdk-isotopes-isotopegrouper	jar	0.0.27
io.github.msdk : msdk-isotopes-isotopepattern	jar	0.0.27
io.github.msdk : msdk-spectra-similarity	jar	0.0.27
io.github.msdk : msdk-featuredetection-chromatogrambuilder	jar	0.0.27
io.github.msdk : msdk-featuredetection-targeted	jar	0.0.27
io.github.msdk : msdk-featuredetection-gridmass	jar	0.0.27
io.github.msdk : msdk-featuredetection-msms	jar	0.0.27
io.github.msdk : msdk-featuredetection-srm	jar	0.0.27
io.github.msdk : msdk-featuredetection-openms	jar	0.0.27
io.github.msdk : msdk-featuredetection-adap3d	jar	0.0.27
org.slf4j : slf4j-api	jar	1.7.26
com.google.code.findbugs : jsr305	jar	3.0.2
com.google.guava : guava	jar	27.1-jre

test (5)

Идентификатор библиотеки	Тип	Версия
junit : junit	jar	4.12
org.mockito : mockito-core	jar	2.27.0
org.hamcrest : hamcrest-library	jar	1.3
com.github.stefanbirkner : system-rules	jar	1.16.1
org.slf4j : slf4j-simple	jar	1.7.26

Модули Проекта

Данный проект не имеет модулей.

About MSDK

Mass Spectrometry Development Kit (MSDK) is a Java library of algorithms for processing mass spectrometry data. The goals of the library are to provide a flexible data model with Java interfaces for mass-spectrometry related objects (including raw spectra, processed data sets, identification results etc.) and to integrate the existing algorithms that are currently scattered around various Java-based graphical tools.

Java version

MSDK requires Java runtime (JRE) version 8 or newer.

Usage

API

Please see the complete MSDK API.

Maven artifacts

MSDK jars are automatically deployed to Maven Central. In order to use MSDK, simply add the following dependency to your pom.xml:

 <dependency>
    <groupId>io.github.msdk</groupId>
    <artifactId>msdk-all</artifactId>
    <version>0.0.27</version>
 </dependency>

Development

Tutorial

Please read our brief tutorial on how to contribute new code to MSDK.

Code style

We use the Google Java Style Guide (https://github.com/google/styleguide)
You can use the eclipse-java-google-style.xml file to automatically format your code in the Eclipse IDE
Please write JavaDoc comments as full sentences, starting with a capital letter and ending with a period. Brevity is preferred (e.g., "Calculates standard deviation" instead of "This method calculates and returns a standard deviation of given set of numbers").

Logging

MSDK uses the SLF4J library for logging. This library can forward all logging calls to your favorite logging framework (java.util.logging, Apache log4j, or others). Please see SLF4J documentation for details.

Building

See the BUILD.md file

Mass Spectrometry Development Kit (MSDK)

MSDK is a collaborative project developing a Java library of algorithms for mass spectrometry data processing.

Версии библиотеки

Версия
0.0.27 28 июл. 2019 г.
0.0.26 28 июл. 2019 г.
0.0.25 28 июл. 2019 г.
0.0.24 28 июл. 2019 г.
0.0.23 27 июл. 2019 г.
0.0.22 27 июл. 2019 г.
0.0.21 5 мая 2019 г.
0.0.20 5 мая 2019 г.
0.0.19 30 нояб. 2018 г.
0.0.18 29 нояб. 2018 г.
0.0.17 16 нояб. 2018 г.
0.0.16 19 сент. 2018 г.
0.0.15 17 сент. 2018 г.
0.0.14 19 июл. 2018 г.
0.0.13 3 июл. 2018 г.
0.0.12 26 июн. 2018 г.
0.0.11 19 сент. 2017 г.
0.0.10 14 сент. 2017 г.
0.0.9 27 авг. 2017 г.
0.0.8 18 июн. 2017 г.
0.0.7 8 дек. 2016 г.
0.0.6 25 мая 2016 г.
0.0.5 20 мар. 2016 г.
0.0.4 24 янв. 2016 г.
0.0.3 30 дек. 2015 г.
0.0.2 14 дек. 2015 г.
0.0.1 24 нояб. 2015 г.