bio.singa:singa-structure

SiNGA (Simulation of Natural Systems using Graph Automata) is an open-source library containing tools especially for structural bioinformatics and systems biology.

Лицензия	Лицензия GNU GPL v3
Группа	Группа bio.singa
Идентификатор	Идентификатор singa-structure
Последняя версия	Последняя версия 0.7.0
Дата	Дата 23 сент. 2020 г.
Тип	Тип jar
Описание	Описание SiNGA (Simulation of Natural Systems using Graph Automata) is an open-source library containing tools especially for structural bioinformatics and systems biology.

Скачать singa-structure

Имя Файла	Размер
singa-structure-0.7.0.pom
singa-structure-0.7.0.jar	489 KB
singa-structure-0.7.0-sources.jar	272 KB
singa-structure-0.7.0-javadoc.jar	1 MB
Обзор

Как подключить последнюю версию

Apache Maven

<!-- https://jarcasting.com/artifacts/bio.singa/singa-structure/ -->
<dependency>
    <groupId>bio.singa</groupId>
    <artifactId>singa-structure</artifactId>
    <version>0.7.0</version>
</dependency>

Gradle Groovy

// https://jarcasting.com/artifacts/bio.singa/singa-structure/
implementation 'bio.singa:singa-structure:0.7.0'

Gradle Kotlin

// https://jarcasting.com/artifacts/bio.singa/singa-structure/
implementation ("bio.singa:singa-structure:0.7.0")

Apache Buildr

'bio.singa:singa-structure:jar:0.7.0'

Apache Ivy

<dependency org="bio.singa" name="singa-structure" rev="0.7.0">
  <artifact name="singa-structure" type="jar" />
</dependency>

Groovy Grape

@Grapes(
@Grab(group='bio.singa', module='singa-structure', version='0.7.0')
)

Scala SBT

libraryDependencies += "bio.singa" % "singa-structure" % "0.7.0"

Leiningen

[bio.singa/singa-structure "0.7.0"]

Зависимости

compile (6)

Идентификатор библиотеки	Тип	Версия
bio.singa : singa-mathematics	jar	0.7.0
bio.singa : singa-features	jar	0.7.0
bio.singa : singa-chemistry	jar	0.7.0
org.rcsb : mmtf-codec	jar	1.0.8
org.rcsb : mmtf-api	jar	1.0.8
org.slf4j : slf4j-api	jar	1.7.21

test (3)

Идентификатор библиотеки	Тип	Версия
org.junit.jupiter : junit-jupiter-api	jar	5.3.1
org.junit.jupiter : junit-jupiter-engine	jar	5.3.1
org.slf4j : slf4j-log4j12	jar	1.7.21

Модули Проекта

Данный проект не имеет модулей.

SiNGA (Simulation of Natural Systems using Graph Automata) is an open-source library containing tools especially for structural bioinformatics and systems biology.

Many aspects of the API are under development. API changes are frequent, never the less we try to keep them minimal.

Quick start

SiNGA is deployed to the Maven Central Repository. Simply add the desired modules to your pom.xml:

<dependencies>
    <dependency>
        <groupId>bio.singa</groupId>
        <artifactId>singa-[module]</artifactId>
        <version>0.7.0</version>
    </dependency>
    <!-- more dependencies -->
</dependencies>

Documentation

The full JavaDocs are available at singa-bio.github.io/singa-doc.

Requirements

Make sure you have the following tools and libraries installed:

Java 8 or later

For p-value calculation for Fit3D:

R installation 3.4.x or later
local package installation privileges or the sfsmisc package pre-installed

Contributors

Christoph Leberecht | christoph.leberecht(at)hs-mittweida.de | https://github.com/cleberecht
Florian Kaiser | contact(at)fkaiser.bio | https://github.com/fkaiserbio

Projects using SiNGA

Fit3D - template-based detection of small structural motifs | https://github.com/fkaiserbio/fit3d
MMM - template-free detection of substructure conservation | https://github.com/fkaiserbio/mmm
PNAtor - generation of PNA aptamer structures | https://github.com/eisold/PNAtor

SiNGA

Developing scientific software for structural and systems biology.

Версии библиотеки

Версия
0.7.0 23 сент. 2020 г.
0.6.0 17 июл. 2019 г.
0.5.0 26 июн. 2019 г.
0.4.2 7 авг. 2018 г.
0.4.0 24 июл. 2018 г.